]> Marijke 2009/ this is just a test ontology, with some additional axioms for rough concepts for "promiscuous bacteria" 1 1 1 1 1 1 1 1 1 1 clusters the StrictHGTGeneClusters (= one or more genes with prediction 'hgt' that are adjacent to each other) where there is allowed to be a gap of max 1 gene between the strict clusters ( if >1 gene betweent any two strict clusters, it is another strict/flexible cluster) 1 1 1 1 1 1 1 1 1 1 1 1 1 1 the grouping of genes on a genome by some criterion, which is specified in its subclasses 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 is a cluster of genes (not necessarily located adjecent to each other on the genome) whose KEGG codes all participate in the same PATHway 11 150 10 1 1 this is a refinement of PromiscuousBacterium, with an additional attribute and change in value for the amount of gene clusters. With the current HGT-DB (tested on 2 August 2009), PromBactPrime has a boundary region of 0, hence appears to be crisp after all. 6 10 1 1 this is the experiment for the rough sets. Given the attributes and the data in the database, PromiscuoisBacterium is indeed a rough concept. see the SQL query in the mapping for the real definition of the concept. is a cluster of genes (not necessarily located adjecent to each other on the genome) whose KEGG codes all participate in the same PATHway 1 1 1 1 1 1 1 1